STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1955PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sen:SACE_4841 mandelate racemase/muconate lactonizing enzyme. (424 aa)    
Predicted Functional Partners:
Caci_5157
PFAM: dihydrodipicolinate synthetase; KEGG: sgr:SGR_5617 putative dihydrodipicolinate synthase; Belongs to the DapA family.
 
  
 0.972
Caci_7513
PFAM: dihydrodipicolinate synthetase; KEGG: sco:SCO1895 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
 0.970
Caci_0798
PFAM: Aldehyde Dehydrogenase; KEGG: nca:Noca_3529 aldehyde dehydrogenase (acceptor).
     
 0.901
Caci_2132
PFAM: Aldehyde Dehydrogenase; KEGG: sma:SAV_5852 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.901
Caci_7300
PFAM: Aldehyde Dehydrogenase; KEGG: sgr:SGR_5794 putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.901
Caci_5156
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: msm:MSMEG_6132 glucarate dehydratase.
  
  
 
0.900
Caci_1956
KEGG: sgr:SGR_5618 putative alanine-rich protein.
 
     0.888
Caci_5155
KEGG: sgr:SGR_5618 putative alanine-rich protein.
 
     0.707
Caci_1431
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; KEGG: msm:MSMEG_6843 NAD-dependent epimerase/dehydratase.
 
   
 0.569
Caci_5154
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: sma:SAV_6359 hypothetical protein.
 
   
 0.554
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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