STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1965KEGG: fre:Franean1_0543 hypothetical protein. (367 aa)    
Predicted Functional Partners:
Caci_5289
PFAM: glycosyl transferase group 1; KEGG: fre:Franean1_0542 glycosyl transferase group 1.
 
     0.976
Caci_7428
PFAM: glycosyl transferase group 1; KEGG: fre:Franean1_0542 glycosyl transferase group 1.
 
     0.976
Caci_3324
PFAM: glycosidase PH1107-related; KEGG: mva:Mvan_1054 glycosidase, PH1107-related.
 
     0.779
Caci_2505
PFAM: glycosidase PH1107-related; KEGG: cth:Cthe_3112 glycosidase, PH1107-related.
 
     0.778
Caci_7534
PFAM: glycosidase PH1107-related; KEGG: cth:Cthe_3112 glycosidase, PH1107-related.
 
     0.778
Caci_6814
PFAM: glycosidase PH1107-related; KEGG: tte:TTE0063 glycosylase.
 
     0.777
Caci_1966
KEGG: saq:Sare_3661 hypothetical protein.
       0.598
Caci_5767
PFAM: glycosidase PH1107-related; KEGG: aba:Acid345_0916 glycosidase, PH1107-related.
  
     0.555
Caci_3344
KEGG: npu:Npun_F3678 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.
  
 
 0.404
Caci_5159
KEGG: npu:Npun_F3678 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.
  
 
 0.404
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.