STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1981Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; TPR repeat- containing protein; NB-ARC domain protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sgr:SGR_2192 putative AfsR-like transcriptional regulator. (1033 aa)    
Predicted Functional Partners:
Caci_4657
Transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; transcriptional activator domain; SMART: AAA ATPase; KEGG: fra:Francci3_2022 transcriptional regulator.
  
  
 0.765
Caci_7511
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sen:SACE_2927 SARP family transcriptional regulator.
  
    0.744
Caci_1980
PFAM: protein of unknown function DUF574; Methyltransferase type 12; KEGG: fra:Francci3_1003 hypothetical protein.
 
     0.727
Caci_7580
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sgr:SGR_4534 putative phosphatase.
  
    0.672
Caci_2100
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: sgr:SGR_4488 putative transcriptional regulator.
   
    0.655
Caci_3346
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sma:SAV_590 cytidine/deoxycytidine deaminase.
   
  
 0.628
Caci_1979
PFAM: Luciferase-like monooxygenase; KEGG: fra:Francci3_0161 luciferase-like.
       0.613
Caci_5932
TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: sma:SAV_1121 chromosome replication initiation inhibitor protein.
   
    0.608
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
   
  
 0.593
Caci_5321
PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: sma:SAV_6921 transcription regulator AsnC.
   
    0.511
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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