STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2001PFAM: phosphoesterase; KEGG: ace:Acel_0232 phosphoesterase. (626 aa)    
Predicted Functional Partners:
Caci_2697
PFAM: legume lectin beta domain; Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: hypothetical protein.
  
     0.666
Caci_3357
KEGG: cma:Cmaq_1265 hypothetical protein.
  
     0.650
Caci_5029
KEGG: bfs:BF0474 hypothetical protein.
  
     0.634
Caci_7496
PFAM: glycoside hydrolase family 8; KEGG: hau:Haur_2431 licheninase.
  
   
 0.622
Caci_3747
KEGG: cma:Cmaq_1265 hypothetical protein.
  
     0.604
Caci_8506
KEGG: gur:Gura_2335 hypothetical protein.
  
     0.597
Caci_6412
SMART: Pyrrolo-quinoline quinone; KEGG: hypothetical protein.
  
     0.588
Caci_3385
KEGG: rsa:RSal33209_2584 acid proteinase, putative.
  
     0.582
Caci_7833
KEGG: cma:Cmaq_1265 hypothetical protein.
  
     0.581
Caci_5220
KEGG: cma:Cmaq_0463 hypothetical protein.
  
     0.577
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.