Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Caci_2007TIGRFAM: benzoyl-CoA oxygenase, B subunit; KEGG: bph:Bphy_1539 benzoyl-CoA oxygenase component B (BoxB). (477 aa)    
Predicted Functional Partners:
Caci_2008
TIGRFAM: benzoyl-CoA-dihydrodiol lyase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bpt:Bpet3570 enoyl-CoA hydratase.
 
 
 0.994
Caci_1745
TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: sma:SAV_4353 phenylacetate-CoA oxygenase subunit PaaB.
 
 
 0.815
Caci_4894
PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: sco:SCO6678 iron-sulfur oxidoreductase beta subunit.
 
 
 0.579
Caci_4901
PFAM: amidohydrolase 2; KEGG: rpe:RPE_4121 amidohydrolase 2.
 
     0.532
Caci_2006
PFAM: protein of unknown function ATP binding; KEGG: sen:SACE_0693 ATP/GTP-binding protein.
       0.517
Caci_2009
Transcriptional regulator, PaaX family; PFAM: PaaX domain protein domain; PaaX domain protein; KEGG: sth:STH211 transcriptional regulatory protein, repressor-type.
 
   
 0.496
Caci_1748
PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: stp:Strop_4069 phenylacetate-CoA oxygenase/reductase, PaaK subunit.
 
 
 0.494
Caci_1023
PFAM: thioesterase superfamily protein; KEGG: sma:SAV_7496 hypothetical protein.
 
  
 0.441
Caci_2005
PFAM: methyladenine glycosylase; KEGG: stp:Strop_0705 DNA-3-methyladenine glycosylase I.
       0.440
Caci_1747
PFAM: protein of unknown function DUF59; KEGG: sen:SACE_3547 phenylacetic acid degradation protein.
  
  
 0.429
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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