Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2016PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_7277 ABC transporter, permease protein. (281 aa)    
Predicted Functional Partners:
Caci_2014
PFAM: extracellular solute-binding protein family 1; KEGG: cms:CMS_1015 putative extracellular solute- binding protein.
 
 
 0.965
Caci_2015
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_7278 putative integral membrane transport protein.
 
  
0.886
Caci_1721
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gtn:GTNG_1822 putative integral membrane transport protein.
 
   0.820
Caci_2623
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nca:Noca_0870 binding-protein-dependent transport systems inner membrane component.
 
 
 0.820
Caci_2255
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: saq:Sare_1081 binding-protein-dependent transport systems inner membrane component.
 
 
 0.768
Caci_7200
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5233 sugar transporter integral membrane protein.
 
 
 0.762
Caci_6903
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_3252 putative ABC-type sugar transport system, permease component.
 
   0.748
Caci_2109
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgr:SGR_5276 putative maltose ABC transporter permease protein.
 
 
 0.740
Caci_2610
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_3466 binding-protein-dependent transport systems inner membrane component.
 
   0.740
Caci_7720
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ace:Acel_0553 binding-protein-dependent transport systems inner membrane component.
 
 
 0.739
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.