STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2018PFAM: ROK family protein; iron dependent repressor; KEGG: sma:SAV_1222 transcriptional regulator. (391 aa)    
Predicted Functional Partners:
Caci_2491
PFAM: ROK family protein; KEGG: hau:Haur_1182 ROK family protein.
  
    0.788
Caci_7220
PFAM: ROK family protein; KEGG: sco:SCO0794 transcriptional regulator.
  
    0.788
Caci_2019
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xac:XAC4233 bleomycin resistance protein.
  
    0.539
Caci_4454
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sco:SCO0561 Fe regulatory protein; Belongs to the Fur family.
  
  
 0.508
Caci_7037
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sma:SAV_5631 metal uptake regulation protein; Belongs to the Fur family.
  
  
 0.508
Caci_8242
PFAM: ferric-uptake regulator; KEGG: sgr:SGR_3971 FUR family transcriptional regulator; Belongs to the Fur family.
  
  
 0.508
Caci_5702
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: sgr:SGR_5483 putative glutamate synthase (NADPH) large subunit.
     
 0.483
Caci_4279
PFAM: ROK family protein; KEGG: nca:Noca_4635 ROK family protein.
 
  
0.445
Caci_6967
PFAM: ROK family protein; KEGG: sma:SAV_1081 transcriptional regulator.
 
  
0.439
Caci_4117
GAF sensor hybrid histidine kinase; KEGG: sma:SAV_1085 two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein.
     
 0.428
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.