STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2076PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mmi:MMAR_1535 ATPase; Belongs to the AAA ATPase family. (473 aa)    
Predicted Functional Partners:
Caci_2075
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3996 tetratricopeptide TPR_2.
 
 0.850
Caci_0002
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.762
Caci_2927
PFAM: conserved hypothetical protein; KEGG: sma:SAV_2593 hypothetical protein.
   
 
 0.695
Caci_5873
PFAM: conserved hypothetical protein; KEGG: sco:SCO5665 hypothetical protein.
   
 
 0.695
Caci_3568
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO0121 ABC transport system ATP-binding protein.
  
   0.686
Caci_6575
KEGG: sma:SAV_1400 hypothetical protein.
    
 0.663
alc
Allantoicase; KEGG: mjl:Mjls_5167 allantoicase; TIGRFAM: allantoicase; PFAM: Allantoicase region; Belongs to the allantoicase family.
   
 
 0.618
prcB
20S proteasome A and B subunits; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family.
  
 0.614
Caci_2672
KEGG: sco:SCO4821 hypothetical protein.
   
 0.604
Caci_2373
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mav:MAV_0668 ABC transporter, ATP-binding protein PstB; Belongs to the ABC transporter superfamily.
  
     0.599
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.