STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2113PFAM: PfkB domain protein; KEGG: sma:SAV_1511 sugar kinase. (304 aa)    
Predicted Functional Partners:
Caci_2112
KEGG: sgr:SGR_5274 LacI family transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.
 
    0.659
Caci_1724
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: kra:Krad_4057 myo-inositol catabolism IolB domain-containing protein.
  
  
 0.634
hisA
Bifunctional HisA/TrpF protein; KEGG: nca:Noca_3040 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4- carboxamide isomerase; TIGRFAM: bifunctional HisA/TrpF protein; PFAM: histidine biosynthesis protein.
  
  
 0.609
Caci_2111
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sgr:SGR_5278 putative alpha-glucosidase.
   
 
 0.571
Caci_4491
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: ace:Acel_1800 thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
  
  
 0.532
Caci_2110
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO2229 maltose permease.
  
    0.461
Caci_1837
PFAM: beta-lactamase domain protein; KEGG: sus:Acid_0861 beta-lactamase domain- containing protein.
  
  
 0.459
Caci_2109
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgr:SGR_5276 putative maltose ABC transporter permease protein.
  
    0.459
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
  
  
 0.418
Caci_2108
PFAM: extracellular solute-binding protein family 1; KEGG: saq:Sare_0747 extracellular solute-binding protein.
 
     0.411
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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