STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2122PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgr:SGR_4695 putative ABC transporter permease protein. (311 aa)    
Predicted Functional Partners:
Caci_2124
PFAM: extracellular solute-binding protein family 1; KEGG: sgr:SGR_4697 putative ABC transporter substrate-binding protein.
 
 
 0.997
Caci_2123
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sgr:SGR_4694 putative ABC transporter ATP- binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.992
Caci_2121
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgr:SGR_4696 putative ABC transporter permease protein.
 
  
  0.989
Caci_7421
PFAM: extracellular solute-binding protein family 1; KEGG: bxe:Bxe_B1835 ABC Fe+3 transporter, periplasmic ligand binding protein.
 
  
 0.786
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  
 0.781
fbpC
ABC transporter related; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
  
 0.776
Caci_7092
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sma:SAV_2590 polyamine ABC transporter ATP- binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.725
Caci_7451
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nwi:Nwi_1008 binding-protein dependent transport system inner membrane protein.
 
     0.714
Caci_3337
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: msm:MSMEG_6521 sulfate/thiosulfate import ATP- binding protein CysA 2; Belongs to the ABC transporter superfamily.
 
  
 0.705
Caci_7090
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5670 polyamine ABC-transporter integral memb rane protein.
 
     0.683
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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