STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2157PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sma:SAV_2787 lipoprotein. (417 aa)    
Predicted Functional Partners:
Caci_1312
PFAM: Methionine synthase vitamin-B12 independent; KEGG: tfu:Tfu_0602 hypothetical protein.
  
     0.730
Caci_8860
PFAM: Colicin V production protein; peptidase S1 and S6 chymotrypsin/Hap; KEGG: sco:SCO3567 serine protease.
 
   
 0.689
Caci_8245
KEGG: sco:SCO4165 hypothetical protein.
  
     0.684
Caci_1220
KEGG: sma:SAV_2879 hypothetical protein.
  
     0.611
Caci_2158
KEGG: sma:SAV_5378 secreted protein.
 
     0.601
Caci_0344
KEGG: sco:SCO3902 integral membrane protein.
  
     0.599
Caci_8432
TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: sma:SAV_4662 D-alanyl-D-alanine carboxypeptidase.
     
 0.545
Caci_7282
KEGG: sma:SAV_5458 penicillin-binding protein; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
     
 0.519
Caci_2156
PFAM: glycoside hydrolase 15-related; KEGG: sma:SAV_1932 glycosyl hydrolase.
       0.517
Caci_0053
Hypothetical protein; KEGG: tfu:Tfu_0129 putative septum site determining protein.
 
    0.516
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.