STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2188PFAM: beta-lactamase; KEGG: rha:RHA1_ro06731 beta-lactamase. (421 aa)    
Predicted Functional Partners:
Caci_6092
PFAM: beta-lactamase; KEGG: aba:Acid345_4043 beta-lactamase.
  
     0.757
Caci_8154
PFAM: beta-lactamase; KEGG: rha:RHA1_ro05862 hypothetical protein.
  
   
 0.754
Caci_8799
PFAM: beta-lactamase; KEGG: mbb:BCG_1769c putative penicillin-binding protein.
  
   
 0.701
Caci_4515
PFAM: beta-lactamase; KEGG: sth:STH635 putative beta-lactamase.
  
     0.697
Caci_1266
PFAM: beta-lactamase; KEGG: hma:rrnAC1970 hypothetical protein.
  
     0.630
Caci_1130
PFAM: beta-lactamase; KEGG: aba:Acid345_2615 uncharacterised conserved protein UCP016719.
  
     0.625
Caci_2189
PFAM: protein of unknown function DUF89; KEGG: sco:SCO6072 hypothetical protein.
       0.551
Caci_5446
KEGG: fre:Franean1_0195 hypothetical protein.
  
     0.465
Caci_7170
FHA modulated ABC efflux pump with fused ATPase and integral membrane subunits; PFAM: ABC transporter related; ABC-2 type transporter; Forkhead-associated protein; SMART: AAA ATPase; Forkhead-associated protein; KEGG: sma:SAV_1159 ABC transporter ATP-binding protein.
  
     0.406
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.