STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2191PFAM: helix-turn-helix HxlR type; KEGG: rxy:Rxyl_0906 transcriptional regulator, HxlR family. (135 aa)    
Predicted Functional Partners:
Caci_2669
PFAM: helix-turn-helix HxlR type; KEGG: sma:SAV_7199 transcriptional regulator.
  
     0.771
Caci_4674
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: sco:SCO2201 hypothetical protein.
  
     0.753
Caci_1043
PFAM: helix-turn-helix HxlR type; KEGG: msm:MSMEG_6580 transcriptional regulator family protein.
  
     0.711
Caci_2192
TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: sco:SCO1393 acetoacetyl-CoA synthetase.
       0.566
Caci_1890
KEGG: sco:SCO0908 hypothetical protein.
   
    0.553
Caci_2190
PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: dar:Daro_2073 NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase.
       0.476
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.