STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2233KEGG: msm:MSMEG_2307 hypothetical protein. (310 aa)    
Predicted Functional Partners:
Caci_6491
KEGG: saq:Sare_2317 luciferase family protein.
  
     0.745
Caci_8770
PFAM: Luciferase-like monooxygenase; KEGG: mjl:Mjls_3337 fis family transcriptional regulator.
  
     0.740
Caci_7612
TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; nitroreductase; KEGG: sco:SCO3037 F420-0--gamma-glutamyl ligase.
 
  
 0.718
Caci_7611
TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: sgr:SGR_4501 hypothetical protein.
 
   
 0.699
Caci_5308
PFAM: Luciferase-like monooxygenase; KEGG: cau:Caur_2833 luciferase family protein.
  
     0.673
Caci_4853
PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO6495 dehydrogenase.
  
     0.670
Caci_4851
PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO7290 dehydrogenase.
  
     0.621
Caci_2768
KEGG: fre:Franean1_2515 alkanesulfonate monooxygenase.
  
     0.615
Caci_4866
PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO6495 dehydrogenase.
  
     0.604
Caci_6160
Conserved hypothetical protein; KEGG: msm:MSMEG_2850 mycobacterial family protein 11 protein.
  
   
 0.602
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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