STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2276PFAM: aminoglycoside phosphotransferase; KEGG: sen:SACE_4273 hypothetical protein. (325 aa)    
Predicted Functional Partners:
Caci_2275
PFAM: lipolytic protein G-D-S-L family; KEGG: sco:SCO1253 hypothetical protein.
       0.773
Caci_2277
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: sen:SACE_3498 ABC-type multidrug transport system ATPase and permease components.
   
   0.566
Caci_1166
PFAM: protein of unknown function DUF214; KEGG: sgr:SGR_4859 hypothetical protein.
  
     0.529
Caci_1333
PFAM: protein of unknown function DUF214; KEGG: sco:SCO2672 hypothetical protein.
  
     0.518
Caci_1722
PFAM: extracellular solute-binding protein family 1; KEGG: cmi:CMM_1262 putative sugar ABC transporter, substrate binding protein.
  
     0.456
Caci_2274
KEGG: sus:Acid_2254 hypothetical protein.
       0.445
Caci_2672
KEGG: sco:SCO4821 hypothetical protein.
    
 0.428
Caci_1721
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gtn:GTNG_1822 putative integral membrane transport protein.
  
     0.403
Caci_6319
PFAM: FAD dependent oxidoreductase; KEGG: saq:Sare_1045 FAD dependent oxidoreductase.
 
   
 0.403
Caci_6567
PFAM: protein of unknown function DUF214; KEGG: sco:SCO2672 hypothetical protein.
  
     0.403
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.