STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2284PFAM: Methyltransferase type 12; KEGG: sma:SAV_626 hypothetical protein. (248 aa)    
Predicted Functional Partners:
Caci_2285
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: sma:SAV_6440 TetR family transcriptional regulator.
       0.664
Caci_2283
PFAM: GCN5-related N-acetyltransferase; KEGG: esi:Exig_0409 GCN5-related N- acetyltransferase.
       0.550
Caci_2287
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sma:SAV_6442 hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.488
Caci_2286
PFAM: Acetoacetate decarboxylase; KEGG: sma:SAV_6441 hypothetical protein.
       0.478
Caci_2288
PFAM: amidohydrolase 2; KEGG: sma:SAV_6443 amidohydrolase.
       0.439
Caci_2289
PFAM: amidohydrolase 2; KEGG: sma:SAV_6444 amidohydrolase.
       0.439
Caci_0442
KEGG: sgr:SGR_7062t hypothetical protein.
  
   0.407
Caci_4117
GAF sensor hybrid histidine kinase; KEGG: sma:SAV_1085 two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein.
 
 
 
 0.406
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.