STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2286PFAM: Acetoacetate decarboxylase; KEGG: sma:SAV_6441 hypothetical protein. (280 aa)    
Predicted Functional Partners:
Caci_2289
PFAM: amidohydrolase 2; KEGG: sma:SAV_6444 amidohydrolase.
 
     0.939
Caci_2287
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sma:SAV_6442 hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.936
Caci_2288
PFAM: amidohydrolase 2; KEGG: sma:SAV_6443 amidohydrolase.
 
     0.929
Caci_4892
KEGG: sco:SCO6703 3-oxoadipate CoA-transferase subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
    
 0.913
Caci_7914
KEGG: sgr:SGR_1191 putative 3-oxoadipate CoA transferase subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
    
 0.913
Caci_4891
KEGG: sma:SAV_1701 3-oxoacid CoA-transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase.
    
 0.909
Caci_7913
KEGG: sgr:SGR_1192 putative 3-oxoadipate CoA transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase.
    
 0.909
Caci_0816
PFAM: pyruvate carboxyltransferase; KEGG: saq:Sare_0032 pyruvate carboxyltransferase.
     
  0.900
Caci_7916
TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rxy:Rxyl_2343 3-hydroxybutyrate dehydrogenase.
     
  0.900
Caci_2192
TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: sco:SCO1393 acetoacetyl-CoA synthetase.
     
  0.800
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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