STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2327KEGG: saq:Sare_4489 hypothetical protein. (502 aa)    
Predicted Functional Partners:
Caci_2155
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nfa:nfa4920 putative hydrolase.
  
     0.673
Caci_6883
KEGG: fre:Franean1_6151 putative transcriptional regulator.
  
     0.564
Caci_1062
PFAM: protein of unknown function DUF742; KEGG: sma:SAV_1631 hypothetical protein.
  
     0.560
Caci_0493
Hypothetical protein; KEGG: fre:Franean1_5724 ATP/GTP-binding protein.
 
   
 0.531
Caci_8587
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: tfu:Tfu_2295 hypothetical protein.
  
   
 0.521
Caci_7371
KEGG: sma:SAV_2128 hypothetical protein.
  
     0.487
Caci_8918
PFAM: integrase family protein; KEGG: fal:FRAAL6356 putative tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
 
  
 0.480
Caci_4422
PFAM: glycoside hydrolase family 18; KEGG: sco:SCO7633 secreted endo-beta-N- acetylglucosaminidase; Belongs to the glycosyl hydrolase 18 family.
  
     0.479
Caci_1502
KEGG: fra:Francci3_3446 XRE family transcriptional regulator.
  
     0.472
Caci_6214
SMART: helix-turn-helix domain protein; KEGG: fra:Francci3_3446 XRE family transcriptional regulator.
  
     0.465
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.