Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Caci_2333 | Caci_2334 | Caci_2333 | Caci_2334 | PFAM: peptidase M50; KEGG: sco:SCO2260 membrane protein. | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; helicase domain protein; KEGG: stp:Strop_1732 DEAD/DEAH box helicase domain- containing protein. | 0.480 |
Caci_2333 | Caci_3411 | Caci_2333 | Caci_3411 | PFAM: peptidase M50; KEGG: sco:SCO2260 membrane protein. | PFAM: metallophosphoesterase; KEGG: sco:SCO6672 hypothetical protein. | 0.430 |
Caci_2333 | Caci_8778 | Caci_2333 | Caci_8778 | PFAM: peptidase M50; KEGG: sco:SCO2260 membrane protein. | PFAM: Bifunctional DNA primase/polymerase; KEGG: sma:SAV_3851 hypothetical protein. | 0.464 |
Caci_2333 | rsmA | Caci_2333 | Caci_0589 | PFAM: peptidase M50; KEGG: sco:SCO2260 membrane protein. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.437 |
Caci_2334 | Caci_2333 | Caci_2334 | Caci_2333 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; helicase domain protein; KEGG: stp:Strop_1732 DEAD/DEAH box helicase domain- containing protein. | PFAM: peptidase M50; KEGG: sco:SCO2260 membrane protein. | 0.480 |
Caci_3411 | Caci_2333 | Caci_3411 | Caci_2333 | PFAM: metallophosphoesterase; KEGG: sco:SCO6672 hypothetical protein. | PFAM: peptidase M50; KEGG: sco:SCO2260 membrane protein. | 0.430 |
Caci_8778 | Caci_2333 | Caci_8778 | Caci_2333 | PFAM: Bifunctional DNA primase/polymerase; KEGG: sma:SAV_3851 hypothetical protein. | PFAM: peptidase M50; KEGG: sco:SCO2260 membrane protein. | 0.464 |
rsmA | Caci_2333 | Caci_0589 | Caci_2333 | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | PFAM: peptidase M50; KEGG: sco:SCO2260 membrane protein. | 0.437 |