STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2377Hypothetical protein; KEGG: fra:Francci3_3215 putative secreted protein. (100 aa)    
Predicted Functional Partners:
Caci_2376
KEGG: ace:Acel_1332 hypothetical protein.
 
     0.873
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.652
Caci_2375
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; magnesium chelatase ChlI subunit; SMART: AAA ATPase; KEGG: sco:SCO1506 recombination factor protein RarA.
       0.643
Caci_7967
PFAM: Phosphoesterase HXTX; KEGG: sma:SAV_3416 secreted protein.
  
     0.618
Caci_2379
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.511
Caci_2381
PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: sgr:SGR_6037 putative shikimate 5- dehydrogenase; Belongs to the shikimate dehydrogenase family.
       0.508
Caci_2399
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sma:SAV_6861 DNA-binding protein.
  
     0.489
Caci_5434
KEGG: sma:SAV_6494 hypothetical protein.
  
     0.489
Caci_3850
PFAM: Antibiotic biosynthesis monooxygenase; globin; KEGG: fal:FRAAL2473 hypothetical protein.
  
     0.462
Caci_4329
Hypothetical protein; KEGG: sgr:SGR_6032 putative secreted protein.
 
     0.455
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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