STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2397PFAM: protein of unknown function DUF1470; KEGG: cmi:CMM_0540 hypothetical protein. (191 aa)    
Predicted Functional Partners:
Caci_1908
PFAM: protein of unknown function DUF1470; KEGG: fre:Franean1_2325 hypothetical protein.
 
     0.715
Caci_8439
PFAM: protein of unknown function DUF1470; KEGG: stp:Strop_1541 hypothetical protein.
  
     0.639
Caci_2395
KEGG: sma:SAV_1441 phosphotriesterase-family protein.
       0.627
Caci_2396
PFAM: Carboxymuconolactone decarboxylase; KEGG: cef:CE1088 hypothetical protein.
       0.590
Caci_5777
PFAM: import inner membrane translocase subunit Tim44; KEGG: LOC100092878; similar to epidermal cytokeratin 2.
  
     0.513
Caci_2398
PFAM: alpha/beta hydrolase fold protein; KEGG: sgr:SGR_6936 putative hydrolase.
       0.511
Caci_5379
KEGG: bid:Bind_0259 putative 3-carboxymuconate cyclase.
  
     0.489
Caci_5029
KEGG: bfs:BF0474 hypothetical protein.
  
     0.401
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.