STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2408KEGG: saq:Sare_0651 hypothetical protein. (160 aa)    
Predicted Functional Partners:
Caci_2409
KEGG: rha:RHA1_ro05039 hypothetical protein.
       0.773
Caci_1887
KEGG: sen:SACE_2199 hypothetical protein.
  
     0.629
Caci_2399
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sma:SAV_6861 DNA-binding protein.
  
     0.572
Caci_2410
PFAM: regulatory protein TetR; KEGG: sma:SAV_2845 TetR family transcriptional regulator.
       0.545
Caci_7861
Hypothetical protein; KEGG: sen:SACE_0556 ABC-type nitrate/sulfonate/bicarbonate transport systems-like protein.
  
     0.535
Caci_5327
PFAM: peptidase M24; creatinase; KEGG: saq:Sare_2376 peptidase M24.
 
     0.524
Caci_6528
PFAM: ABC transporter related; X-Pro dipeptidyl- peptidase domain protein; alpha/beta hydrolase fold protein; peptidase S15; SMART: AAA ATPase; KEGG: saq:Sare_0296 ABC transporter related.
  
     0.498
Caci_2281
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sma:SAV_7066 integral membrane protein.
  
     0.495
Caci_0325
KEGG: rha:RHA1_ro03810 hypothetical protein.
  
     0.401
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.