STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2471PFAM: Heavy metal transport/detoxification protein; KEGG: sgr:SGR_4828 putative copper chaperone. (108 aa)    
Predicted Functional Partners:
Caci_8844
TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO1046 metal transporter ATPase.
 
 
 0.985
Caci_2470
KEGG: rha:RHA1_ro03536 hypothetical protein.
 
   
 0.706
Caci_0305
PFAM: Penicillinase repressor; KEGG: fre:Franean1_6581 CopY family transcriptional regulator.
 
  
 0.583
Caci_5191
PFAM: protein of unknown function DUF156; KEGG: nfa:nfa8420 hypothetical protein.
 
  
 0.581
Caci_2472
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: nca:Noca_1815 electron transfer flavoprotein beta-subunit.
  
    0.545
Caci_4145
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: sma:SAV_4693 hypothetical protein.
  
  
 0.517
Caci_5639
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: sco:SCO3377 hypothetical protein.
  
  
 0.517
Caci_9018
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: sco:SCO6358 hypothetical protein.
  
  
 0.517
Caci_2473
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: ace:Acel_0685 electron transfer flavoprotein, alpha subunit.
       0.438
Caci_2469
Hypothetical protein.
       0.433
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.