STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2512PFAM: extracellular solute-binding protein family 5; KEGG: sgr:SGR_1977 putative ABC transporter substrate-binding protein. (565 aa)    
Predicted Functional Partners:
Caci_2514
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgr:SGR_1975 putative ABC transporter permease protein.
 
 
 0.930
Caci_2515
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgr:SGR_1974 putative ABC transporter permease protein.
 
 
 0.920
Caci_2516
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sgr:SGR_1973 putative ABC transporter ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.895
Caci_2513
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sgr:SGR_1976 putative ABC transporter ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.893
Caci_1179
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llm:llmg_1459 putative di/TRI-peptide transport system permease protein.
 
 
 0.848
Caci_1180
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_2743 binding-protein-dependent transport systems inner membrane component.
 
 
 0.808
Caci_4519
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE0225 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
 0.723
Caci_7671
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: sma:SAV_4877 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit.
  
    0.586
Caci_2511
KEGG: sgr:SGR_1978 LacI family transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.
 
    0.574
Caci_3524
KEGG: sgr:SGR_597 hypothetical protein.
 
     0.534
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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