STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2556PFAM: lipolytic protein G-D-S-L family; KEGG: sma:SAV_1075 secreted protein. (414 aa)    
Predicted Functional Partners:
Caci_2555
KEGG: sma:SAV_1076 hypothetical protein.
   
   0.725
Caci_4873
PFAM: Alpha-L-arabinofuranosidase B catalytic; Ricin B lectin; SMART: Ricin B lectin; KEGG: fungal alpha-L-arabinofuranosidase.
  
     0.518
Caci_4968
PFAM: UbiA prenyltransferase; KEGG: cau:Caur_0843 UbiA prenyltransferase.
 
     0.518
Caci_5160
Xylan 1,4-beta-xylosidase; PFAM: Alpha-L-arabinofuranosidase B catalytic; alpha-L-arabinofuranosidase B; KEGG: fungal alpha-L-arabinofuranosidase.
  
     0.512
Caci_4972
Xylan 1,4-beta-xylosidase; PFAM: Alpha-L-arabinofuranosidase B catalytic; KEGG: hypothetical protein.
  
 
   0.504
Caci_2729
PFAM: Alpha-L-arabinofuranosidase B catalytic; cellulose-binding family II; SMART: cellulose-binding family II; KEGG: fungal alpha-L-arabinofuranosidase.
 
   0.503
Caci_4882
PFAM: Alpha-L-arabinofuranosidase B catalytic; Ricin B lectin; SMART: Ricin B lectin; KEGG: fungal alpha-L-arabinofuranosidase.
  
     0.503
Caci_4927
PFAM: Alpha-L-arabinofuranosidase B catalytic; Ricin B lectin; SMART: Ricin B lectin; KEGG: similar to alpha-L-arabinofuranosidase.
  
     0.488
Caci_2554
PFAM: Carbohydrate binding family 6; KEGG: sma:SAV_1077 melibiase.
       0.485
Caci_4931
PFAM: Alpha-L-arabinofuranosidase B catalytic; Ricin B lectin; SMART: Ricin B lectin; KEGG: hypothetical protein.
  
     0.481
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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