Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2575PFAM: regulatory protein TetR; KEGG: mjl:Mjls_0917 TetR family transcriptional regulator. (183 aa)    
Predicted Functional Partners:
Caci_2574
PFAM: Patatin; KEGG: nfa:nfa9880 hypothetical protein.
       0.535
Caci_6821
PFAM: regulatory protein TetR; KEGG: pol:Bpro_4769 transcriptional regulator, TetR family.
  
     0.519
Caci_4942
PFAM: regulatory protein TetR; KEGG: kra:Krad_2221 TetR family transcriptional regulator.
  
     0.501
Caci_2576
Hypothetical protein.
       0.491
Caci_5132
PFAM: regulatory protein TetR; KEGG: mva:Mvan_4572 TetR family transcriptional regulator.
  
     0.477
Caci_3274
PFAM: regulatory protein TetR; KEGG: aav:Aave_4615 transcriptional regulator, TetR family.
  
     0.411
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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