STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2590PFAM: alpha/beta hydrolase fold protein; KEGG: psb:Psyr_2609 alpha/beta hydrolase fold protein. (397 aa)    
Predicted Functional Partners:
Caci_7471
PFAM: Carboxymuconolactone decarboxylase; KEGG: vei:Veis_1856 carboxymuconolactone decarboxylase.
 
 
 0.915
Caci_2396
PFAM: Carboxymuconolactone decarboxylase; KEGG: cef:CE1088 hypothetical protein.
 
 
 0.914
Caci_4338
KEGG: mgi:Mflv_0526 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
  
 
 0.914
Caci_4339
3-oxoacid CoA-transferase, B subunit; KEGG: nca:Noca_1015 butyryl-CoA:acetate CoA transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase.
  
 
 0.913
Caci_4887
TIGRFAM: 3-oxoadipate enol-lactonase; 4- carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; alpha/beta hydrolase fold protein; KEGG: sco:SCO6697 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase.
 
 
0.912
Caci_7870
PFAM: alpha/beta hydrolase fold protein; KEGG: tte:TTE0552 alpha/beta superfamily hydrolase/acyltransferase.
  
  
 
0.910
Caci_2589
TIGRFAM: chlorinating enzyme; PFAM: Phytanoyl-CoA dioxygenase; KEGG: psb:Psyr_2610 chlorinating enzyme.
 
    0.887
Caci_2588
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: sma:SAV_3642 non-ribosomal peptide synthetase.
       0.646
Caci_2587
TIGRFAM: PfaD family protein; malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: scl:sce4138 putative acyltransferase/oxidoreductase.
 
    0.633
Caci_2591
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: rsa:RSal33209_2791 Crp family transcriptional regulator.
 
    0.625
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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