STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2601PFAM: Hydroxymethylglutaryl-coenzyme A synthase domain protein; Hydroxymethylglutaryl-coenzyme A synthase domain; KEGG: mxa:MXAN_3945 polyketide TA biosynthesis protein TaF. (424 aa)    
Predicted Functional Partners:
Caci_2598
PFAM: KR domain protein; Beta-ketoacyl synthase; Methyltransferase type 11; Enoyl-CoA hydratase/isomerase; Methyltransferase type 12; short-chain dehydrogenase/reductase SDR; aromatic amino acid beta- eliminating lyase/threonine aldolase; alpha/beta hydrolase fold protein; phosphopantetheine-binding; KEGG: scl:sce3193 polyketide synthase.
 
     0.943
Caci_2597
Malonyl CoA-acyl carrier protein transacylase; KEGG: scl:sce4135 hybrid polyketide synthase/nonribosomal peptide synthetase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding.
 
  
 0.917
Caci_2587
TIGRFAM: PfaD family protein; malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: scl:sce4138 putative acyltransferase/oxidoreductase.
 
  
 0.868
Caci_2603
PFAM: Beta-ketoacyl synthase; KEGG: sen:SACE_4575 polyketide beta-ketoacyl:acyl carrier protein synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
  
 0.866
Caci_2600
PFAM: phosphopantetheine-binding; KEGG: mxa:MXAN_3946 putative acyl carier protein.
  
 
 0.840
Caci_2602
KEGG: sen:SACE_4569 hypothetical protein.
  
 
 0.840
Caci_2596
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bte:BTH_II1669 polyketide biosynthesis enoyl- CoA hydratase.
 
 
 0.795
Caci_2599
KEGG: stp:Strop_2227 hypothetical protein.
       0.793
Caci_2592
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; phosphopantetheine-binding; Non- ribosomal peptide synthetase; condensation domain protein; KEGG: scl:sce4135 hybrid polyketide synthase/nonribosomal peptide synthetase.
 
 
 0.791
Caci_0059
KEGG: msm:MSMEG_5992 hypothetical protein.
  
 
 0.711
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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