STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2681KEGG: sco:SCO0664 hypothetical protein. (678 aa)    
Predicted Functional Partners:
Caci_2682
PFAM: regulatory protein DeoR; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein DeoR; KEGG: sgr:SGR_290 LacI family transcriptional regulator.
 
     0.791
Caci_2680
PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_1804 sugar ABC transporter solute- binding protein.
       0.773
Caci_2683
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sgr:SGR_2768 2-hydroxyacid family dehydrogenase.
 
     0.771
Caci_3811
PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein DeoR; KEGG: sgr:SGR_2764 DeoR family transcriptional regulator.
  
     0.725
Caci_3810
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sgr:SGR_2768 2-hydroxyacid family dehydrogenase.
 
     0.671
Caci_0623
PFAM: regulatory protein DeoR; periplasmic binding protein/LacI transcriptional regulator; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: sgr:SGR_290 LacI family transcriptional regulator.
  
     0.600
Caci_4913
PFAM: glycoside hydrolase family 12; KEGG: sco:SCO5691 hypothetical protein.
  
     0.569
Caci_0127
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sma:SAV_2089 2-hydroxyacid dehydrogenase.
 
     0.545
Caci_1602
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sma:SAV_2089 2-hydroxyacid dehydrogenase.
 
     0.508
Caci_6721
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: atc:AGR_L_3399 hypothetical protein.
 
     0.504
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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