STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2686PFAM: CsbD family protein; KEGG: scl:sce0440 hypothetical protein; Belongs to the UPF0337 (CsbD) family. (98 aa)    
Predicted Functional Partners:
Caci_2504
PFAM: protein of unknown function DUF1458; KEGG: sco:SCO0915 hypothetical protein.
   
    0.606
Caci_2687
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sen:SACE_6753 cyclopropane-fatty-acyl- phospholipid synthase.
       0.516
Caci_3366
KEGG: fal:FRAAL3957 hypothetical protein.
   
    0.501
Caci_2688
KEGG: rha:RHA1_ro04243 hypothetical protein.
       0.491
Caci_3481
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.473
dinB
DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
  
    0.439
Caci_1753
Acetyltransferase; KEGG: nwi:Nwi_1761 acetyltransferase.
  
    0.439
Caci_8237
KEGG: nfa:nfa55810 hypothetical protein.
  
    0.439
Caci_7351
PFAM: OsmC family protein; KEGG: nca:Noca_1377 OsmC family protein.
  
  
 0.435
Caci_8688
PFAM: OsmC family protein; KEGG: sgr:SGR_6917 hypothetical protein.
  
  
 0.435
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.