STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2728PFAM: Alpha-L-arabinofuranosidase B catalytic; cellulose-binding family II; SMART: cellulose-binding family II; KEGG: fungal alpha-L-arabinofuranosidase. (499 aa)    
Predicted Functional Partners:
Caci_4884
PFAM: glycoside hydrolase family 62; Ricin B lectin; SMART: Ricin B lectin; KEGG: sco:SCO5932 arabinofuranosidase.
 
     0.832
Caci_4905
PFAM: Ricin B lectin; glycoside hydrolase family 62; SMART: Ricin B lectin; KEGG: cja:CJA_3282 ferruloyl esterase, putative, fee1B.
 
     0.805
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
   
 
  0.800
Caci_4926
PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: hypothetical protein.
  
 
   0.786
Caci_4876
Cellulase; PFAM: glycoside hydrolase family 5; protein of unknown function DUF291; KEGG: bha:BH0603 endo-beta-1,4-glucanase (celulase B); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 0.771
Caci_2607
KEGG: fra:Francci3_3458 hypothetical protein.
  
 
   0.743
Caci_3593
KEGG: fal:FRAAL3174 hypothetical protein.
  
     0.726
Caci_0462
Endo-1,4-beta-xylanase; KEGG: tfu:Tfu_1213 xylanase; PFAM: glycoside hydrolase family 11; SMART: cellulose-binding family II; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.715
Caci_5224
PFAM: Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: hypothetical protein.
 
   
 0.712
Caci_3742
PFAM: Ricin B lectin; lipolytic protein G-D-S-L family; SMART: Ricin B lectin; KEGG: gvi:gll2764 unknown protein.
   0.709
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.