STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2746PFAM: Ricin B lectin; glycoside hydrolase family 30; Ig family protein; KEGG: hypothetical protein; K01201 glucosylceramidase. (726 aa)    
Predicted Functional Partners:
Caci_2729
PFAM: Alpha-L-arabinofuranosidase B catalytic; cellulose-binding family II; SMART: cellulose-binding family II; KEGG: fungal alpha-L-arabinofuranosidase.
 
     0.735
Caci_4927
PFAM: Alpha-L-arabinofuranosidase B catalytic; Ricin B lectin; SMART: Ricin B lectin; KEGG: similar to alpha-L-arabinofuranosidase.
  
     0.735
Caci_5224
PFAM: Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: hypothetical protein.
 
   
 0.733
Caci_4941
PFAM: glycoside hydrolase family 11; Ricin B lectin; SMART: Ricin B lectin; KEGG: sco:SCO2292 secreted endo-1,4-beta-xylanase B (xylanase B); Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.726
Caci_7478
Xylan 1,4-beta-xylosidase; PFAM: Alpha-L-arabinofuranosidase B catalytic; KEGG: hypothetical protein.
  
     0.724
Caci_4972
Xylan 1,4-beta-xylosidase; PFAM: Alpha-L-arabinofuranosidase B catalytic; KEGG: hypothetical protein.
  
     0.722
Caci_5160
Xylan 1,4-beta-xylosidase; PFAM: Alpha-L-arabinofuranosidase B catalytic; alpha-L-arabinofuranosidase B; KEGG: fungal alpha-L-arabinofuranosidase.
  
     0.717
Caci_4931
PFAM: Alpha-L-arabinofuranosidase B catalytic; Ricin B lectin; SMART: Ricin B lectin; KEGG: hypothetical protein.
  
     0.706
Caci_4884
PFAM: glycoside hydrolase family 62; Ricin B lectin; SMART: Ricin B lectin; KEGG: sco:SCO5932 arabinofuranosidase.
     0.705
Caci_7244
PFAM: Ricin B lectin; glycoside hydrolase family 16; SMART: Ricin B lectin; KEGG: ace:Acel_0129 carbohydrate-binding family 6 protein.
 
   
 0.700
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.