STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2772KEGG: fre:Franean1_2021 hypothetical protein. (246 aa)    
Predicted Functional Partners:
Caci_2770
PFAM: Acyl-CoA dehydrogenase type 2 domain; acyl- CoA dehydrogenase domain protein; KEGG: fre:Franean1_2020 acyl-CoA dehydrogenase type 2.
 
     0.823
Caci_2763
PFAM: extracellular solute-binding protein family 5; KEGG: fre:Franean1_2510 extracellular solute- binding protein.
 
     0.813
Caci_2771
PFAM: Luciferase-like monooxygenase; KEGG: sma:SAV_6696 monooxygenase.
 
     0.800
Caci_2773
KEGG: fal:FRAAL4830 alkanesulfonate monooxygenase, FMNH(2)-dependent.
 
     0.800
Caci_2769
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: tfu:Tfu_0340 trimethylamine-N-oxide reductase (cytochrome c); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.761
Caci_2768
KEGG: fre:Franean1_2515 alkanesulfonate monooxygenase.
       0.752
Caci_2764
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fre:Franean1_2511 binding-protein-dependent transport systems inner membrane component.
 
     0.698
Caci_2765
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fre:Franean1_2512 binding-protein-dependent transport systems inner membrane component.
 
     0.688
Caci_2767
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fre:Franean1_2514 oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
       0.684
Caci_7687
TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: sgr:SGR_2980 putative NADH dehydrogenase chain E.
   
   0.665
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.