STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2782KEGG: sma:SAV_696 hypothetical protein. (240 aa)    
Predicted Functional Partners:
Caci_2781
PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO5516 integral membrane efflux protein.
       0.768
Caci_2780
Transcriptional regulator, XRE family; PFAM: NB-ARC domain protein; SMART: helix-turn-helix domain protein; Tetratricopeptide domain protein; KEGG: stp:Strop_4244 transcriptional activator domain-containing protein.
 
     0.702
Caci_6121
KEGG: mjl:Mjls_2137 hypothetical protein.
  
     0.589
Caci_0284
KEGG: sen:SACE_3261 hypothetical protein.
 
     0.542
Caci_8493
PFAM: regulatory protein TetR; KEGG: sgr:SGR_5970 TetR family transcriptional regulator.
  
     0.504
Caci_5576
PFAM: regulatory protein TetR; KEGG: mmi:MMAR_2831 transcriptional regulator.
  
     0.479
Caci_6256
PFAM: membrane protein of unknown function; KEGG: pca:Pcar_2963 hypothetical protein.
 
  
 0.469
Caci_0693
PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL5378 putative ABC transport system integral membrane protein.
 
    0.465
Caci_5976
KEGG: sma:SAV_2170 cholesterol esterase.
  
     0.460
Caci_5323
KEGG: sco:SCO2678 hypothetical protein.
  
     0.457
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.