STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2790KEGG: gvi:glr3809 hypothetical protein. (327 aa)    
Predicted Functional Partners:
Caci_5220
KEGG: cma:Cmaq_0463 hypothetical protein.
 
     0.754
Caci_8506
KEGG: gur:Gura_2335 hypothetical protein.
  
    0.700
Caci_5777
PFAM: import inner membrane translocase subunit Tim44; KEGG: LOC100092878; similar to epidermal cytokeratin 2.
  
     0.694
Caci_2697
PFAM: legume lectin beta domain; Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: hypothetical protein.
  
     0.691
Caci_6157
PFAM: Fibronectin type III domain protein; PKD domain containing protein; phosphoesterase; SMART: PKD domain containing protein; Fibronectin type III domain protein; KEGG: sus:Acid_7414 hypothetical protein.
  
     0.663
Caci_0607
KEGG: pap:PSPA7_4664 hypothetical protein.
 
     0.657
Caci_6579
Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; KEGG: sco:SCO3291 regulatory protein.
  
     0.656
Caci_1605
PFAM: coagulation factor 5/8 type domain protein; SMART: coagulation factor 5/8 type domain protein; Parallel beta-helix repeat; KEGG: sma:SAV_1723 mycodextranase.
  
     0.648
Caci_5029
KEGG: bfs:BF0474 hypothetical protein.
  
    0.643
Caci_3357
KEGG: cma:Cmaq_1265 hypothetical protein.
  
     0.637
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.