STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2828Hypothetical protein; KEGG: kaz; kazrin. (163 aa)    
Predicted Functional Partners:
Caci_2829
PFAM: glycoside hydrolase family 25; KEGG: rha:RHA1_ro08409 glycosyl hydrolase.
       0.574
Caci_2830
KEGG: lla:L197961 hypothetical protein.
       0.574
Caci_2831
KEGG: lxx:Lxx12890 hypothetical protein.
       0.574
Caci_2832
PFAM: lipolytic protein G-D-S-L family; KEGG: sma:SAV_1965 secreted protein.
       0.574
Caci_2826
Hypothetical protein.
       0.517
Caci_2827
Hypothetical protein.
       0.517
Caci_2833
Hypothetical protein.
       0.413
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.