STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2890Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH; KEGG: saq:Sare_0152 GntR family transcriptional regulator. (257 aa)    
Predicted Functional Partners:
Caci_2891
Putative transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; KEGG: saq:Sare_0151 UbiC transcription regulator- associated domain-containing protein.
 
    
0.833
Caci_0648
TIGRFAM: regulatory protein, FmdB family; KEGG: sco:SCO2357 hypothetical protein.
  
     0.672
Caci_0266
PFAM: protein of unknown function DUF397; KEGG: nfa:nfa56120 hypothetical protein.
  
     0.568
Caci_8470
PFAM: protein of unknown function DUF397; KEGG: nfa:nfa56120 hypothetical protein.
  
     0.505
Caci_2889
Hypothetical protein.
       0.484
Caci_0264
SMART: helix-turn-helix domain protein; KEGG: fal:FRAAL0518 putative DNA-binding protein.
  
    0.478
Caci_6096
PFAM: protein of unknown function DUF901; KEGG: sgr:SGR_5366 hypothetical protein.
  
     0.476
Caci_2880
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: fra:Francci3_1989 putative PAS/PAC sensor protein.
 
     0.469
Caci_1502
KEGG: fra:Francci3_3446 XRE family transcriptional regulator.
  
    0.466
Caci_8306
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: stp:Strop_1661 helix-turn-helix domain- containing protein.
  
    0.464
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.