STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_2934KEGG: nfa:nfa40200 hypothetical protein. (104 aa)    
Predicted Functional Partners:
Caci_2931
Hypothetical protein.
       0.773
Caci_2932
Hypothetical protein.
       0.773
Caci_2933
Hypothetical protein.
       0.773
Caci_2935
Hypothetical protein.
       0.773
Caci_2936
Hypothetical protein.
       0.773
Caci_2923
Hypothetical protein.
       0.741
Caci_2924
KEGG: sma:SAV_5908 hypothetical protein.
       0.741
Caci_2925
Hypothetical protein.
       0.741
Caci_2926
Hypothetical protein.
       0.741
Caci_2927
PFAM: conserved hypothetical protein; KEGG: sma:SAV_2593 hypothetical protein.
       0.741
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.