STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3013Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rxy:Rxyl_0882 transcriptional regulator, LuxR family. (111 aa)    
Predicted Functional Partners:
Caci_3014
PFAM: transcription factor WhiB; KEGG: sco:SCO5240 hypothetical protein.
       0.773
Caci_3017
KEGG: sma:SAP1p60 hypothetical protein.
       0.578
Caci_3015
Hypothetical protein.
       0.568
Caci_3016
Hypothetical protein.
       0.568
Caci_3018
Hypothetical protein.
       0.568
Caci_3019
Hypothetical protein.
       0.568
Caci_5142
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: fre:Franean1_6795 LuxR family transcriptional regulator.
 
 
 0.490
Caci_3025
KEGG: mkm:Mkms_4301 hypothetical protein.
       0.482
Caci_4229
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: fre:Franean1_6795 LuxR family transcriptional regulator.
 
 
 0.482
Caci_3624
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: kra:Krad_2729 regulatory protein LuxR.
 
 
 0.479
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.