STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3021Hypothetical protein. (60 aa)    
Predicted Functional Partners:
Caci_3020
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: kra:Krad_4338 single-strand binding protein.
       0.773
Caci_3022
Hypothetical protein; KEGG: fgenesh4_pg.C_scaffold_20282000001.
       0.773
Caci_3023
Hypothetical protein.
       0.773
Caci_3024
Hypothetical protein.
       0.773
Caci_3025
KEGG: mkm:Mkms_4301 hypothetical protein.
       0.773
Caci_3026
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: dsy:DSY3419 hypothetical protein.
       0.773
Caci_3015
Hypothetical protein.
       0.625
Caci_3016
Hypothetical protein.
       0.625
Caci_3017
KEGG: sma:SAP1p60 hypothetical protein.
       0.625
Caci_3018
Hypothetical protein.
       0.625
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.