STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3055Hypothetical protein. (104 aa)    
Predicted Functional Partners:
Caci_3056
Hypothetical protein.
       0.773
Caci_3046
Hypothetical protein.
       0.520
Caci_3047
TIGRFAM: RecT protein; PFAM: RecT protein; KEGG: stp:Strop_4008 RecT protein.
       0.520
Caci_3048
Phage-related protein predicted endonuclease-like protein; KEGG: mmi:MMAR_3929 hypothetical protein.
       0.520
Caci_3049
Hypothetical protein.
       0.520
Caci_3050
Hypothetical protein.
       0.520
Caci_3051
Hypothetical protein.
       0.520
Caci_3052
Hypothetical protein.
       0.520
Caci_3053
Hypothetical protein.
       0.520
Caci_3054
KEGG: mpa:MAP0041 hypothetical protein.
       0.520
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.