STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3072KEGG: tfu:Tfu_0164 hypothetical protein. (293 aa)    
Predicted Functional Partners:
Caci_2249
PFAM: cytochrome oxidase assembly; KEGG: sma:SAV_6320 cytochrome c oxidase subunit XV assembly protein.
 
 
 0.869
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 
 0.733
Caci_1677
PFAM: cytochrome c oxidase subunit III; KEGG: sgr:SGR_5357 putative cytochrome c oxidase subunit III.
 
  
 0.622
Caci_1668
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
 
 0.608
Caci_3067
PFAM: electron transport protein SCO1/SenC; KEGG: fra:Francci3_2499 electron transport protein SCO1/SenC.
  
  
 0.586
Caci_1667
TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; KEGG: sma:SAV_6047 cytochrome c oxidase subunit II.
 
 
 0.584
Caci_6133
KEGG: kra:Krad_4121 hypothetical protein.
  
    0.525
Caci_1678
PFAM: cytochrome c class I; KEGG: sco:SCO2150 cytochrome c heme-binding subunit.
 
  
 0.517
Caci_1679
PFAM: Rieske [2Fe-2S] domain protein; KEGG: sco:SCO2149 Rieske iron-sulfur protein.
  
 
 
 0.516
Caci_1680
PFAM: Cytochrome b/b6 domain; KEGG: sco:SCO2148 cytochrome b subunit.
  
 
 
 0.499
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.