STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3081PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sma:SAV_2178 ABC transporter substrate- binding protein. (304 aa)    
Predicted Functional Partners:
Caci_3085
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO6064 ABC transporter permease protein.
 
 0.997
Caci_3087
KEGG: sco:SCO6062 ABC transporter ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 0.993
Caci_3086
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO6063 ABC transporter permease protein.
 
 
 0.988
Caci_3084
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sma:SAV_2178 ABC transporter substrate- binding protein.
  
  
 
0.906
Caci_3466
PFAM: PRC-barrel domain protein; KEGG: sco:SCO0919 hypothetical protein.
  
    0.501
Caci_3993
KEGG: sma:SAV_4165 hypothetical protein.
  
    0.501
Caci_6840
KEGG: sco:SCO2461 secreted protein.
  
    0.501
Caci_7671
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: sma:SAV_4877 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit.
 
   
 0.465
Caci_3082
SMART: Rhodanese domain protein; KEGG: sen:SACE_6210 rhodanese-like.
       0.435
Caci_3083
PFAM: cysteine dioxygenase type I; KEGG: sen:SACE_6209 cysteine dioxygenase.
       0.423
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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