STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3088PFAM: 2-nitropropane dioxygenase NPD; KEGG: rha:RHA1_ro04690 2-nitropropane dioxygenase. (376 aa)    
Predicted Functional Partners:
Caci_3091
KEGG: sgr:SGR_6834 putative nonspecific lipid- transfer protein.
 
    0.843
Caci_3090
PFAM: protein of unknown function DUF35; KEGG: nca:Noca_2732 hypothetical protein.
 
     0.827
Caci_3092
KEGG: sma:SAV_1242 acetyl-CoA acetyltransferase.
 
    0.793
Caci_5359
PFAM: MaoC domain protein dehydratase; KEGG: swi:Swit_1853 hypothetical protein.
 
    0.738
Caci_0062
PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro05828 hypothetical protein.
 
    0.718
Caci_0059
KEGG: msm:MSMEG_5992 hypothetical protein.
 
     0.700
Caci_1379
PFAM: coenzyme A transferase; KEGG: saq:Sare_2805 coenzyme A transferase.
 
    0.598
Caci_1366
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: nca:Noca_2769 acyl-CoA dehydrogenase domain- containing protein.
 
  
 0.588
Caci_1380
PFAM: coenzyme A transferase; KEGG: stp:Strop_2605 coenzyme A transferase.
 
  
 0.585
Caci_3089
PFAM: AMP-dependent synthetase and ligase; KEGG: sgr:SGR_6799 putative acyl-CoA synthetase.
 
  
 0.574
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.