STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3126PFAM: protein of unknown function DUF881; KEGG: sgr:SGR_6144 hypothetical protein. (571 aa)    
Predicted Functional Partners:
Caci_3125
PFAM: protein of unknown function DUF1290; KEGG: kra:Krad_3099 hypothetical protein.
 
  
 0.972
Caci_3123
PFAM: protein of unknown function DUF881; KEGG: sma:SAV_6978 hypothetical protein.
 
   
 0.954
Caci_0042
PFAM: protein of unknown function DUF881; KEGG: sgr:SGR_3719 hypothetical protein.
  
     0.775
Caci_3122
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sco:SCO1389 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyl-transferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.743
Caci_3124
Hypothetical protein.
       0.741
Caci_3130
PFAM: protein of unknown function DUF151; KEGG: sco:SCO1382 hypothetical protein.
     
 0.730
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
      0.624
Caci_2343
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sco:SCO1527 membrane transferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.572
Caci_7847
TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sgr:SGR_1768 putative phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.542
Caci_0588
PFAM: Transglycosylase domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: sma:SAV_3588 hypothetical protein.
  
     0.534
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.