STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3130PFAM: protein of unknown function DUF151; KEGG: sco:SCO1382 hypothetical protein. (156 aa)    
Predicted Functional Partners:
Caci_3129
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: ace:Acel_1225 MerR family transcriptional regulator.
 
   
 0.896
Caci_3131
SMART: regulatory protein MerR; KEGG: mgi:Mflv_3399 MerR family transcriptional regulator.
     
 0.856
Caci_3128
FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: fra:Francci3_1468 FHA domain-containing protein.
 
   
 0.735
Caci_3126
PFAM: protein of unknown function DUF881; KEGG: sgr:SGR_6144 hypothetical protein.
     
 0.730
arc
AAA ATPase central domain protein; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis.
  
    0.691
Caci_3123
PFAM: protein of unknown function DUF881; KEGG: sma:SAV_6978 hypothetical protein.
     
 0.665
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
 
     0.573
dinB-2
DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
     
 0.548
Caci_3122
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sco:SCO1389 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyl-transferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.467
Caci_1312
PFAM: Methionine synthase vitamin-B12 independent; KEGG: tfu:Tfu_0602 hypothetical protein.
  
     0.451
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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