STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3136PFAM: YCII-related; KEGG: nca:Noca_0396 DGPFAETKE family protein. (108 aa)    
Predicted Functional Partners:
Caci_3137
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: nca:Noca_4614 sigma-70 region 2 domain- containing protein.
 
     0.942
Caci_0561
PFAM: YCII-related; KEGG: kra:Krad_2755 DGPFAETKE family protein.
  
     0.645
Caci_4578
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: art:Arth_3349 putative RNA polymerase, sigma- 24 subunit, ECF subfamily.
 
     0.624
Caci_4345
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sgr:SGR_628 RNA polymerase ECF-subfamily sigma factor.
 
     0.616
Caci_8666
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sgr:SGR_628 RNA polymerase ECF-subfamily sigma factor.
 
     0.599
Caci_4746
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: fre:Franean1_4326 RNA polymerase ECF- subfamily sigma factor.
 
     0.573
Caci_0562
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: saq:Sare_0956 RNA polymerase ECF-subfamily sigma factor.
 
     0.559
Caci_8875
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: saq:Sare_0956 RNA polymerase ECF-subfamily sigma factor.
 
     0.534
Caci_3135
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nfa:nfa31570 putative short chain dehydrogenase.
       0.525
Caci_4226
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: saq:Sare_4650 RNA polymerase ECF-subfamily sigma factor.
 
     0.524
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.