STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3205PFAM: aldo/keto reductase; KEGG: sma:SAV_1172 oxidoreductase. (319 aa)    
Predicted Functional Partners:
Caci_5118
PFAM: aldo/keto reductase; KEGG: sco:SCO0429 oxidoreductase.
  
  
 
0.920
Caci_1135
PFAM: aldo/keto reductase; KEGG: gox:GOX2371 putative oxidoreductase.
  
  
 
0.914
Caci_5769
PFAM: aldo/keto reductase; KEGG: nfa:nfa29550 putative oxidoreductase.
  
  
 
0.911
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
     
 0.900
Caci_8955
PFAM: aldo/keto reductase; KEGG: fra:Francci3_0395 hypothetical protein.
     
  0.900
Caci_8964
KEGG: fra:Francci3_0395 hypothetical protein.
     
  0.900
Caci_1160
PFAM: aldo/keto reductase; KEGG: mab:MAB_1528c oxidoreductase.
 
 
 0.606
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.