STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3207PFAM: protein of unknown function DUF1503; KEGG: sma:SAV_3579 hypothetical protein. (257 aa)    
Predicted Functional Partners:
Caci_5366
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cmi:CMM_2820 Cro/CI family transcriptional regulator.
   
 
 0.636
Caci_7229
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: fra:Francci3_1837 hypothetical protein.
   
 
 0.636
Caci_8538
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rxy:Rxyl_1265 transcriptional regulator, XRE family with cupin sensor.
   
 
 0.636
Caci_3208
PFAM: UspA domain protein; KEGG: sco:SCO0937 hypothetical protein.
       0.590
Caci_1121
KEGG: sco:SCO6530 hypothetical protein.
  
     0.588
Caci_3758
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_4232 hypothetical protein.
  
     0.558
Caci_5879
PFAM: YCII-related; KEGG: sco:SCO7731 hypothetical protein.
  
     0.547
Caci_6701
Conserved hypothetical protein; KEGG: sus:Acid_2379 TPR repeat-containing protein.
  
     0.537
Caci_8042
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_4232 hypothetical protein.
  
     0.527
Caci_4565
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rha:RHA1_ro04790 transcriptional regulator.
  
     0.515
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.