STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3208PFAM: UspA domain protein; KEGG: sco:SCO0937 hypothetical protein. (147 aa)    
Predicted Functional Partners:
Caci_3207
PFAM: protein of unknown function DUF1503; KEGG: sma:SAV_3579 hypothetical protein.
       0.590
Caci_3209
PFAM: conserved hypothetical protein; KEGG: sma:SAV_2751 hypothetical protein; Belongs to the LOG family.
  
  
 0.561
Caci_8239
KEGG: sen:SACE_7115 aerial mycelium formation protein.
  
     0.465
Caci_3481
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.461
Caci_1134
PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: fal:FRAAL3355 putative transcriptional regulatory protein.
  
   
 0.448
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
  
 0.446
Caci_7772
KEGG: sgr:SGR_853 putative integral membrane protein.
  
  
 0.436
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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